Workshop Program

San Jose, June 8th, 2011

Rooms: Willow Glen 2&3

San Jose, CA, USA



3DAPAS  Sessions Authors  

ECMLS Sessions





Joint 3DAPAS and ECMLS Keynote

Cloud Computing and the DNA Data Race [slides]
Michael Schatz, Cold Spring Harbor Laboratory

  3DAPAS  Sessions Authors   ECMLS Sessions Authors


Cosmic Microwave Background Data Analysis at the Peta-scale and Beyond (invited paper) [slides] Julian Borrill Lawrence Berkeley National Laboratory & University of California at Berkeley  

A parallel random forest classifier for R [slides]

Lawrence Mitchell,

Terence M. Sloan,

Muriel Mewissen,

Peter Ghazal,

Thorsten Forster,

Michal Piotrowski

and Arthur Trew

EPCC, University of Edinburgh, United Kingdom 
Division of Pathway Medicine, University of Edinburgh, United Kingdom  


Adaptive, Secure, and Scalable Distributed Data Outsourcing: A Vision Paper  Li Xiong
Slawomir Goryczka
Vaidy Sunderam
Emory University  

Adapting Bioinformatics Applications for Heterogeneous Systems: a case study [slides]

Irena Lanc,

Peter Bui,

Douglas Thain

and Scott Emrich

University of Notre Dame


Towards Jungle Computing with Ibis/Constellation [slides] Jason Maassen,
Niels Drost,
Henri E. Bal,
Frank J. Seinstra
Vrije Universiteit  

Characterizing Deep Sequencing Analytics Using BFAST: Towards a Scalable Distributed Architecture for Next-Generation Sequencing Data [slides]

Joohyun Kim,

Sharath Maddineni

and Shantenu Jha

Center for Computation and Technology, LSU




ECMLS Sessions Authors  

ECMLS Sessions



A Hierarchical Framework for Cross-Domain MapReduce Execution [slides]

Yuan Luo,

Zhenhua Guo,

Yiming Sun,

Beth Plale,

Judy Qiu

and Wilfred Li

Indiana University  

High-Throughput Virtual Molecular Docking: Hadoop Implementation of AutoDock4 on a Private Cloud [slides]

Sally Ellingson

Jerome Baudry

University of Tennessee


Joint 3DAPAS and ECMLS Panel

Topic: Dynamic Distributed Data Intensive Analysis Environments for Life Sciences [slides]
Moderator: Geoffrey Fox, Indiana University
Panelists: Dan Katz, University of Chicago, Shantenu Jha, Louisiana State University, Judy Qiu, Indiana University, Jon Weissman, University of minnesota