Workshop Program

Monday, June 18, 2012

Room: 1.180

Location: Building 35 of TU Delft, Cornelis Drebbelweg 5, 2628 CM, Delft, Netherlands

 

Time

Sessions

Authors

Links

08:30AM

Welcome

Judy Qiu, Indiana University, USA

 

08:30AM

Keynote Talk

Image-Based Biomedical Modeling, Simulation and Visualization, Chris Johnson, University of Utah, USA

slides

09:15AM

Workflow as a Service: An approach to workflow farming

Reginald Cushing, Adam Belloum, Marian Bubak,
Vladimir Korkhov,
Dmitry Vasyunin
University of Amsterdam, Netherlands

paper

slides

09:45AM

Accelerating Virtual High-Throughput Ligand Docking: Screening One Million Compounds Using a Petascale Supercomputer Sally Ellingson, Sivanesan Dakshanamurthy, Milton Brown, Jeremy Smith, Jerome Baudry University of Tennessee, US

paper

slides

Georgetown University Medical Cntr, USA

10:15AM

Accelerating Tandem MS Protein Database Searches Using OpenCL Rick Weber,
David Jenkins, Nicholas Lineback, Greg Peterson
University of Tennesse, USA

paper

slides

10:45AM

Break

 

11:00AM

Information-Theoretic Analysis of Molecular (Co)Evolution using Graphics Processing Units Michael Waechter, Kathrin Jaeger, Stephanie Weissgraeber,
Sven Widmer,
Michael Goesele, Kay Hamacher
TU Darmstadt, Germany

paper

slides

11:30AM

Visualizing the Protein Sequence Universe Larissa Stanberry, Roger Higdon, Winston Haynes, Natali Kolker, William Broomall, Saliya Ekanayake, Yang Ruan, Judy Qiu, Eugene Kolker, Geoffrey Fox Seattle Children's Hosptial, USA

paper

sildes

Indiana University, USA

12:00PM

HyMR: a Hybrid MapReduce Workflow System Yang Ruan, Zhenhua Guo, Yuduo Zhou,
Judy Qiu,
Geoffrey Fox
Indiana University, USA

paper

slides

12:30PM

Lunch

 

01:00PM

01:30PM

Panel session

The Challenges at the Interface of Life Sciences and Cyberinfrastructure and how should we tackle them?

Chris Johnson, Geoffrey Fox, Shantenu Jha, Judy Qiu

 
02:30PM

03:00PM

Break

 
03:30PM Novel Parameter Estimation Method for Biological Systems Xian Yang,
Yike Guo,
Jeremy Bradley
Imperial College London, UK

paper

slides

4:00PM

Understanding MapReduce-based Next-Generation Sequencing Alignment on Distributed Cyberinfrastructure Pradeep Kumar Mantha, Shantenu Jha, Joohyun Kim, Andre Luckow, Nayong Kim Louisiana State University, USA

paper

sildes

Rutgers University, USA

04:30PM

A Lightweight Platform for Managing Biomedical Simulation Stefan Zasada,
David Chan-Wei Chang,
Ali Haidar,
Peter Coveney
University College London, UK

paper

slides

5:00PM

Best Student Paper Award

Accelerating Tandem MS Protein Database Searches Using OpenCL

Dirck Weber, David Jenkins, Nicholas Lineback, Greg Peterson, University of Tennessee, USA